Published Data Sets

To see a table of all published data sets with paraCell atlases:Click Here

paraCell Tutorials

To use the full breadth of paraCell, please have a look at the tutorial on the WIKI. Helpful might be the advanced genes searches.

Host - Parasites

Cow-Theileria
Cow-Theileria
paraCell
Toxoplasma-Mouse
Toxoplasma-Mouse
paraCell
PBMC from children with clinical malaria Malaria
PBMC from children with clinical malaria Malaria
paraCell Here is the paper.
Ovine abomasum
Ovine abomasum
paraCell legacy
<i>Plasmodium berghei</i> infected host cell
Plasmodium berghei infected host cell
paraCell legacy
<i>Plasmodium berghei</i> infected red blood cell
Plasmodium berghei infected red blood cell
legacy
Mouse brain cell during <i>Trypanosoma brucei</i> infection
Mouse brain cell during Trypanosoma brucei infection
paraCell

Human-COVID-19

<i>Trypanosoma brucei</i> cell cycle
Spatially resolved single-cell atlas unveils a distinct cellular signature of fatal lung COVID-19 in a Malawian population
Lung Atlas Lung Immune Atlas Lung Stromal Atlas Nasal Atlas Blood Atlas IMC

Parasites

<i>Trypanosoma brucei</i> cell cycle
Trypanosoma brucei cell cycle
paraCell
<i>Trypanosoma brucei</i> bloodstream form
Trypanosoma brucei bloodstream form
paraCell legacy
<i>Trypanosoma brucei</i> vector stages
Trypanosoma brucei vector stages
paraCell legacy

Immune cells

Synovial atlas of Macrophages in RA
Synovial atlas of Macrophages in RA
paraCell legacy
Role of CD18 in γδ T cells
Role of CD18 in γδ T cells
paraCell legacy

paraCell is a Single-cell analysis framework primarily developed since 2022 by Edward Agboraw at the Otto Lab, University of Glasgow.

The original R/Shiny web-app (referred to above as "legacy") was developed by Jesse Rop under the supervision of Prof Thomas Otto. It was funded by the GCRF SMALL GRANTS FUND.